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Test Code LAB9148 Nonketotic Hyperglycinemia Panel

Aliases

Germline testing

Special Collection Notes

Collect specimen according to standard operating procedure

Specimen Type

Whole Blood/Purple Top Tube (K2 EDTA) or Buccal Swab.  

Specimen Volume

  • Optimal Volume: 4.0 ml
  • Minimum Volume: 0.5 ml

Additional Notes

Nonketotic Hyperglycinemia (NKH, also known as glycine encephalopathy) is a rare inborn error of glycine metabolism characterized by a deficiency in the glycine cleavage enzyme system leading to accumulation of glycine throughout the body, especially in the central nervous system. The disorder is diagnosed biochemically by elevated glycine levels in the cerebrospinal fluid (CSF) and plasma with an increased CSF: plasma glycine ratio. Phenotypically, individuals with this disorder present in the neonatal or infantile period, up to 3 months of age, with lethargy, hypotonia, seizures, and apnea, leading to early death or various degrees of intellectual disability and intractable seizures. A small subset of individuals may also present with milder symptoms after 3 months of age. Based on outcomes, NKH can be severe or attenuated. Onset in the neonatal or infantile period usually results in severe NKH with no developmental progress and intractable epilepsy. Individuals with onset later than 3 months of age and about half of those with infantile onset, exhibit attenuated NKH with variable developmental progress, and treatable or no epilepsy.

TAT

3 weeks

Method

Next Generation Sequencing

CPT

81479

Performing Section

PRECISION DIAGNOSTICS

Purpose/Principle

The CHCO Nonketotic Hyperglycinemia (NKH) Panel utilizes next-generation sequencing technology to detect genomic variants in genes that are associated with glycine cleavage system. This test is useful for the diagnosis of patients who are suspected to have classic or variant nonketotic hyperglycinemia.

 

The assay interrogates the coding regions and flanking intronic bases of the cited genes, with the capacity to detect sequence variants, and copy number variants (CNVs). Uniform genomic coverage is achieved through standardized specimen processing and short-read sequencing. Sequencing data are monitored by quality control metrics to ensure high confidence in the accuracy and specificity of the variant calls. The CNV resolution threshold is approximately 1 Mb, although smaller events may be detected depending on regional complexity and data quality.

 

AMT, BOLA3, GCSH, GLDC, GLRX5, IBA57, LIAS, LIPT1, LIPT2, MECR, NFU1, SLC25A26, SLC6A9