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Test Code LAB8614 Methylmalonic Acidemia and Homocystinuria Panel

Aliases

Germline testing

Performing Section

PRECISION DIAGNOSTICS

Specimen Type

Whole Blood/Purple Top Tube (K2 EDTA) or Buccal Swab.  

Specimen Volume

  • Optimal Volume: 4.0 ml
  • Minimum Volume: 0.5 ml

TAT

3 weeks

CPT

81479

Special Collection Notes

Collect specimen according to standard operating procedure

Additional Notes

Methylmalonic acidemia and homocystinuria (MMA_HC) is a group of biochemically related but genetically heterogenous disorders characterized by increased levels of organic acids and/or homocysteine in the blood. The clinical course of MMA_HC is metabolic decompensation that manifests variably with regards to phenotype and age of onset depending on which step in the metabolic pathway is affected, and the severity of the deficit that ensues. The phenotypic features include intrauterine growth restriction, poor feeding, microcephaly, progressive microcephaly, cytopenias (including megaloblastic anemia), global developmental delay, encephalopathy, hypotonia, seizures, neuropsychiatric symptoms, progressive cognitive decline, thromboembolic complications, and/or subacute combined degeneration of the spinal cord. The disorder is often detected via newborn screening based on elevated C3 propionylcarnitine or decreased methionine

This group of disorders includes:

1. Combined methylmalonic acidemia and homocystinuria due to disorders of intracellular cobalamin metabolism (AdoCbl and MeCbl deficiency; cblC and cblD-combined type),
2. Isolated methylmalonic acidemia due to complete or partial deficiency of the enzyme methylmalonyl-CoA mutase (mut0 enzymatic subtype or mut– enzymatic subtype, respectively), a defect in the transport or synthesis of its cofactor, adenosyl-cobalamin (cblA, cblB, or cblD-MMA), or deficiency of the enzyme methylmalonyl-CoA epimerase, and
3. Isolated homocystinuria due to methionine synthase reductase deficiency (cblE), methionine synthase deficiency (cblG), and cblD-homocystinuria

Method

Next Generation Sequencing

Purpose/Principle

The CHCO Methylmalonic aciduria homocystinuria (MMA_HC) Panel utilizes next-generation sequencing technology to detect genomic variants in genes that are associated with increased levels of organic acids and/or homocysteine in the blood. This test is useful for the diagnosis of patients who are suspected to have methylmalonic aciduria, homocystinuria, or combined defects of cobalamin metabolism based on clinical symptoms, biochemical findings, or abnormal newborn-screening results.

 

The assay interrogates the coding regions and flanking intronic bases of the cited genes, with the capacity to detect sequence variants, and copy number variants (CNVs). Uniform genomic coverage is achieved through standardized specimen processing and short-read sequencing. Sequencing data are monitored by quality control metrics to ensure high confidence in the accuracy and specificity of the variant calls. The CNV resolution threshold is approximately 1 Mb, although smaller events may be detected depending on regional complexity and data quality.

 

ABCD4, ACSF3, AHCY, ALDH6A1, AMN, CBLIF, CBS, CD320, CUBN, GNMT, HCFC1, IVD, LMBRD1, MAT1A, MCEE, MLYCD, MMAA, MMAB, MMACHC, MMADHC, MMUT, MTHFD1, MTHFR, MTR, MTRR, PRDX1, SLC46A1, SUCLA2, SUCLG1, TCN1, TCN2, THAP11, ZNF143